Package: longevity 1.3.1

longevity: Statistical Methods for the Analysis of Excess Lifetimes

A collection of parametric and nonparametric methods for the analysis of survival data, described in <doi:10.32614/RJ-2025-034>. Parametric families implemented include Gompertz-Makeham, exponential and generalized Pareto models and extended models. The package includes an implementation of the nonparametric maximum likelihood estimator for arbitrary truncation and censoring pattern based on Turnbull (1976) <doi:10.1111/j.2517-6161.1976.tb01597.x>, along with graphical goodness-of-fit diagnostics. Parametric models for positive random variables and peaks over threshold models based on extreme value theory are described in Rootzén and Zholud (2017) <doi:10.1007/s10687-017-0305-5>; Belzile et al. (2021) <doi:10.1098/rsos.202097> and Belzile et al. (2022) <doi:10.1146/annurev-statistics-040120-025426>.

Authors:Leo Belzile [aut, cre], Mitchell O'Hara-Wild [ctb]

longevity_1.3.1.tar.gz
longevity_1.3.1.zip(r-4.7)longevity_1.3.1.zip(r-4.6)longevity_1.3.1.zip(r-4.5)
longevity_1.3.1.tgz(r-4.6-x86_64)longevity_1.3.1.tgz(r-4.6-arm64)longevity_1.3.1.tgz(r-4.5-x86_64)longevity_1.3.1.tgz(r-4.5-arm64)
longevity_1.3.1.tar.gz(r-4.7-arm64)longevity_1.3.1.tar.gz(r-4.7-x86_64)longevity_1.3.1.tar.gz(r-4.6-arm64)longevity_1.3.1.tar.gz(r-4.6-x86_64)
longevity_1.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
longevity/json (API)

# Install 'longevity' in R:
install.packages('longevity', repos = c('https://lbelzile.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lbelzile/longevity/issues

Pkgdown/docs site:https://lbelzile.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

extremessurvival-analysiscpp

4.90 score 20 scripts 296 downloads 87 exports 13 dependencies

Last updated from:5cf8f5a1b1. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK180
linux-devel-x86_64OK165
source / vignettesOK210
linux-release-arm64OK178
linux-release-x86_64OK159
macos-release-arm64OK151
macos-release-x86_64OK289
macos-oldrel-arm64OK155
macos-oldrel-x86_64OK363
windows-develOK141
windows-releaseOK140
windows-oldrelOK149
wasm-releaseOK115

Exports:.censTruncLimits.censTruncLimitsDtrunc.check_surv.turnbull_intervalsautoplot.elife_northropcolemanautoplot.elife_parautoplot.elife_profileautoplot.elife_tstabautoplot.elife_tstab_endpointboxcox_transfocheck_argumentscheck_elife_distdbearddbeardmakedelifedextgpdextweibulldgompdgompmakedgpddgppiecedperksdperksmakeendpoint.profileendpoint.tstabfit_ditrunc_elifefit_elifehazard_elifehazard_fn_elifehbeardhbeardmakehelifehexphextgphextweibullhgomphgompmakehgpdhperkshperksmakehweibulllpost_elifenc_score_testnc_testnll_ditrunc_elifenll_elifenp_elifenpsurvpbeardpbeardmakepelifepextgppextweibullpgomppgompmakepgpdpgppiecepperkspperksmakeprof_exp_scaleprof_gp_endptprof_gp_scaletprof_gp_shapeqbeardqbeardmakeqelifeqextgpqextweibullqgompqgompmakeqgpdqgppieceqperksqperksmaker_ditrunc_elifer_dtrunc_elifer_ltrc_eliferbeardrelifergppiecesamp_elifesamp2_elifeselifetest_ditrunc_elifetest_elifetstabturnbull_intervals

Dependencies:codetoolsdigestfuturefuture.applyglobalslistenvnumDerivparallellyRcppRcppArmadillorlangRsolnptruncnorm

Introducing longevity
What does longevity do? | Example | References
Rendered fromintroduction.Rmdusingknitr::rmarkdown

Last update: 2024-07-06
Started: 2023-09-11

Nonparametric maximum likelihood estimation for survival data
References
Rendered fromnonparametric.Rmdusingknitr::rmarkdown

Last update: 2023-09-11
Started: 2023-09-08